A C D E F G H I J L M N O P Q R S T V W _
All Classes All Packages

A

addDistances(String, String, String, String[], double, double) - Method in class com.Grapher.Analysis.Analyser

Add distances between CustomVertexs.

addImmersion(String, String, String[], int) - Method in class com.Grapher.Analysis.Analyser

Add immersion, i.e. accumulated distance to all other CustomVertexs.

ALERTs - Static variable in class com.Grapher.Analysis.Analyser

algorithm() - Method in class com.Grapher.Apps.Params

Give the algorithm(s).

Analyser - Class in com.Grapher.Analysis

Analyser applies algorithms to Graph.

Analyser(Params) - Constructor for class com.Grapher.Analysis.Analyser

Create and associate an algoritm.

Analyser.DifferenceAlg - Enum in com.Grapher.Analysis

apply() - Method in class com.Grapher.Analysis.Analyser

Apply the algorithms.

applyClustering(String, int) - Method in class com.Grapher.Analysis.Analyser

Apply Clustering algorit_quiethm.

applyConnectivity(int, boolean) - Method in class com.Grapher.Analysis.Analyser

Apply Connectivity algorithm.

applyStrongConnectivity() - Method in class com.Grapher.Analysis.Analyser

Apply Strong Connectivity algorithm.

attributesReg() - Static method in class com.Grapher.CustomGraph.CustomEdge

Give all registered Attributes.

attributesReg() - Static method in class com.Grapher.CustomGraph.CustomVertex

Give all registered Attributes.

C

CLI - Class in com.Grapher.Apps

Simple Command Line.

CLI() - Constructor for class com.Grapher.Apps.CLI

Create.

com.Grapher.Analysis - package com.Grapher.Analysis

Grapher Graph anaalyses.

com.Grapher.Analysis.Algorithms - package com.Grapher.Analysis.Algorithms

Grapher Graph analyses algorithms.

com.Grapher.Apps - package com.Grapher.Apps

Grapher Apps.

com.Grapher.Convertors - package com.Grapher.Convertors

Grapher Graph Convertors.

com.Grapher.CustomGraph - package com.Grapher.CustomGraph

Grapher Graph Convertors.

com.Grapher.GUI - package com.Grapher.GUI

Grapher Graph visualisation.

com.Grapher.Tests - package com.Grapher.Tests

Grapher Tests.

com.Grapher.Utils - package com.Grapher.Utils

Lomikel Utils.

configuration() - Static method in class com.Grapher.Utils.Info

Get run-time Configuration.

ConnectivityAlgorithm - Class in com.Grapher.Analysis.Algorithms

ConnectivityAlgorithm calculates the level of connectivity between vertices.

ConnectivityAlgorithm(Graph<CustomVertex, CustomEdge>, boolean) - Constructor for class com.Grapher.Analysis.Algorithms.ConnectivityAlgorithm

Create and run.

convert() - Method in class com.Grapher.Convertors.Convertor

Read and execute the conversion.

convert(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Convertors.Convertor

Execute the conversion.

Convertor - Class in com.Grapher.Convertors

Convertor converts between Graph formats.

Convertor(Params) - Constructor for class com.Grapher.Convertors.Convertor

Convert graph file into new format.

createGraphMLExporter() - Method in class com.Grapher.Convertors.Convertor

Create GraphMLExporter.

createGraphMLImporter() - Method in class com.Grapher.Convertors.Convertor

Create GraphMLImporter.

createHrefGraph() - Static method in class com.Grapher.Tests.HelloJGraphT

Creates a toy directed graph based on URI objects that represents link structure.

createStringGraph() - Static method in class com.Grapher.Tests.HelloJGraphT

Create a toy graph based on String objects.

CustomEdge - Class in com.Grapher.CustomGraph

CustomEdge represents graph edge.

CustomEdge() - Constructor for class com.Grapher.CustomGraph.CustomEdge

Create new Edge from the default id.

CustomEdge(long) - Constructor for class com.Grapher.CustomGraph.CustomEdge

Create new Edge from the supplied id.

CustomEdgeSupplier - Class in com.Grapher.CustomGraph

CustomEdgeSupplier supplies Supplier for CustomEdge.

CustomEdgeSupplier() - Constructor for class com.Grapher.CustomGraph.CustomEdgeSupplier

CustomVertex - Class in com.Grapher.CustomGraph

CustomVertex represents graph vertex.

CustomVertex() - Constructor for class com.Grapher.CustomGraph.CustomVertex

Create new Vertex from the default id.

CustomVertex(long) - Constructor for class com.Grapher.CustomGraph.CustomVertex

Create new Vertex from the supplied id.

CustomVertexSupplier - Class in com.Grapher.CustomGraph

CustomVertexSupplier supplies Supplier for CustomVertex.

CustomVertexSupplier() - Constructor for class com.Grapher.CustomGraph.CustomVertexSupplier

D

DEFAULT_SIZE - Static variable in class com.Grapher.GUI.Shower

DEFAULT_SIZE - Static variable in class com.Grapher.Tests.HelloJGraphX

difference(CustomVertex, CustomVertex, String[], TreeMap<String, Double>, Analyser.DifferenceAlg) - Method in class com.Grapher.Analysis.Analyser

Give the difference between CustomVertexs.

DifferenceAlg() - Constructor for enum com.Grapher.Analysis.Analyser.DifferenceAlg

E

equals(Object) - Method in class com.Grapher.CustomGraph.CustomEdge

equals(Object) - Method in class com.Grapher.CustomGraph.CustomVertex

execute() - Method in class com.Grapher.Apps.CLI

Execute command line in required way.

F

fill(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Analysis.Analyser

Fill the Graph to be acted upon.

G

generateWeight() - Method in class com.Grapher.CustomGraph.CustomEdge

Generate the Edge weight.

get() - Method in class com.Grapher.CustomGraph.CustomEdgeSupplier

get() - Method in class com.Grapher.CustomGraph.CustomVertexSupplier

getAttribute(String) - Method in class com.Grapher.CustomGraph.CustomEdge

Give one Attribute.

getAttribute(String) - Method in class com.Grapher.CustomGraph.CustomVertex

Give one Attribute.

getAttributes() - Method in class com.Grapher.CustomGraph.CustomEdge

Give Map of all Attributes.

getAttributes() - Method in class com.Grapher.CustomGraph.CustomVertex

Give Map of all Attributes.

getId() - Method in class com.Grapher.CustomGraph.CustomEdge

Give the Edge id.

getId() - Method in class com.Grapher.CustomGraph.CustomVertex

Give the Vertex id.

getLbl() - Method in class com.Grapher.CustomGraph.CustomEdge

Give the Edge label (type).

getLbl() - Method in class com.Grapher.CustomGraph.CustomVertex

Give the Vertex label (type).

getLeastConnected(int) - Method in class com.Grapher.Analysis.Algorithms.ConnectivityAlgorithm

Give the least connected Vertexes.

getMostConnected(int) - Method in class com.Grapher.Analysis.Algorithms.ConnectivityAlgorithm

Give the most connected Vertexes.

getName() - Method in class com.Grapher.CustomGraph.CustomEdge

Give the Edge name.

getName() - Method in class com.Grapher.CustomGraph.CustomVertex

Give the Vertex name.

graph() - Method in class com.Grapher.Analysis.Analyser

Give current Graph.

H

hashCode() - Method in class com.Grapher.CustomGraph.CustomEdge

hashCode() - Method in class com.Grapher.CustomGraph.CustomVertex

HelloJGraphT - Class in com.Grapher.Tests

A simple introduction to using JGraphT.

HelloJGraphT() - Constructor for class com.Grapher.Tests.HelloJGraphT

HelloJGraphX - Class in com.Grapher.Tests

A demo applet that shows how to use JGraphX to visualize JGraphT graphs.

HelloJGraphX() - Constructor for class com.Grapher.Tests.HelloJGraphX

help() - Static method in class com.Grapher.Apps.CLI

Give the help.

I

id - Variable in class com.Grapher.CustomGraph.CustomEdgeSupplier

id - Variable in class com.Grapher.CustomGraph.CustomVertexSupplier

infile() - Method in class com.Grapher.Apps.Params

Give the input file name.

Info - Class in com.Grapher.Utils

Info keeps configuration information about the Grapher setup.

Info() - Constructor for class com.Grapher.Utils.Info

init() - Method in class com.Grapher.Tests.HelloJGraphX

init(boolean) - Static method in class com.Grapher.Utils.Init

Setup system.

Init - Class in com.Grapher.Utils

Init provides common initialisation.

Init() - Constructor for class com.Grapher.Utils.Init

J

jgxAdapter - Variable in class com.Grapher.GUI.Shower

jgxAdapter - Variable in class com.Grapher.Tests.HelloJGraphX

L

LIN - com.Grapher.Analysis.Analyser.DifferenceAlg

log - Static variable in class com.Grapher.Analysis.Algorithms.ConnectivityAlgorithm

Logging .

log - Static variable in class com.Grapher.Analysis.Analyser

Logging .

log - Static variable in class com.Grapher.Apps.CLI

Logging .

log - Static variable in class com.Grapher.Apps.Params

Logging .

log - Static variable in class com.Grapher.Convertors.Convertor

Logging .

log - Static variable in class com.Grapher.CustomGraph.CustomEdge

Logging .

log - Static variable in class com.Grapher.CustomGraph.CustomVertex

Logging .

log - Static variable in class com.Grapher.GUI.Shower

Logging .

log - Static variable in class com.Grapher.Utils.Info

Logging .

log - Static variable in class com.Grapher.Utils.Init

Logging .

LOG - com.Grapher.Analysis.Analyser.DifferenceAlg

M

main(String[]) - Static method in class com.Grapher.Apps.CLI

Create and execute following command line arguments.

main(String[]) - Static method in class com.Grapher.Tests.HelloJGraphT

The starting point for the demo.

main(String[]) - Static method in class com.Grapher.Tests.HelloJGraphX

An alternative starting point for this demo, to also allow running this applet as an application.

N

name() - Static method in class com.Grapher.Utils.Info

Give application name.

noedge() - Method in class com.Grapher.Apps.Params

Tell whether Edges should be ignored on import.

novertex() - Method in class com.Grapher.Apps.Params

Tell whether edge-less Vertices should be ignored on export.

O

outfile() - Method in class com.Grapher.Apps.Params

Give the output file name.

P

Params - Class in com.Grapher.Apps

Runtime parameters.

Params() - Constructor for class com.Grapher.Apps.Params

Create.

Params(boolean, boolean, boolean, boolean, String, String, String, String) - Constructor for class com.Grapher.Apps.Params

Create and set parameters.

parseArgs(String[]) - Method in class com.Grapher.Apps.CLI

Parse the cli arguments.

PCAs - Static variable in class com.Grapher.Analysis.Analyser

putAttribute(String, Attribute) - Method in class com.Grapher.CustomGraph.CustomEdge

Put one Attribute.

putAttribute(String, Attribute) - Method in class com.Grapher.CustomGraph.CustomVertex

Put one Attribute.

Q

quiet() - Method in class com.Grapher.Apps.Params

Tell whether running in a quiet mode.

R

RADECs - Static variable in class com.Grapher.Analysis.Analyser

read() - Method in class com.Grapher.Convertors.Convertor

Read Graph from input file.

readGraphML(InputStream, boolean, boolean, boolean, boolean) - Method in class com.Grapher.Convertors.Convertor

Create Graph from GraphML InputStream.

release() - Static method in class com.Grapher.Utils.Info

Give builder release.

renderHrefGraph(Graph<URI, DefaultEdge>) - Static method in class com.Grapher.Tests.HelloJGraphT

Render a graph in DOT format.

S

script() - Method in class com.Grapher.Apps.Params

Give the script file name.

serialVersionUID - Static variable in class com.Grapher.Tests.HelloJGraphX

setAlgorithm(String) - Method in class com.Grapher.Apps.Params

Set the algorithm(s).

setId(long) - Method in class com.Grapher.CustomGraph.CustomEdge

Set the Edge id.

setId(long) - Method in class com.Grapher.CustomGraph.CustomVertex

Set the Vertex id.

setInfile(String) - Method in class com.Grapher.Apps.Params

Set the input file name.

setNamesMap(Map<String, String>) - Static method in class com.Grapher.CustomGraph.CustomEdge

Set mapping from Edge labels to Edge names.

setNamesMap(Map<String, String>) - Static method in class com.Grapher.CustomGraph.CustomVertex

Set mapping from Vertex labels to Vertex names.

setNoedge(boolean) - Method in class com.Grapher.Apps.Params

Set whether Edges should be ignored on import.

setNovertex(boolean) - Method in class com.Grapher.Apps.Params

Set whether edge-less Vertices should be ignored on export.

setOutfile(String) - Method in class com.Grapher.Apps.Params

Set the output file name.

setQuiet(boolean) - Method in class com.Grapher.Apps.Params

Set whether running in a quiet mode.

setScript(String) - Method in class com.Grapher.Apps.Params

Set the script file name.

setShow(boolean) - Method in class com.Grapher.Apps.Params

Set whether just show GUI.

setWeightsMap(Map<String, String>) - Static method in class com.Grapher.CustomGraph.CustomEdge

Set mapping from Edge labels to Edge weight atributes.

show() - Method in class com.Grapher.Apps.Params

Tell whether just show GUI.

show(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.GUI.Shower

Show Graph.

Shower - Class in com.Grapher.GUI

Shower shows Graph in a graphical window.

Shower() - Constructor for class com.Grapher.GUI.Shower

Create JApplet.

SQR - com.Grapher.Analysis.Analyser.DifferenceAlg

T

toString() - Method in class com.Grapher.CustomGraph.CustomEdge

toString() - Method in class com.Grapher.CustomGraph.CustomVertex

traverseHrefGraph(Graph<URI, DefaultEdge>, URI) - Static method in class com.Grapher.Tests.HelloJGraphT

Traverse a graph in depth-first order and print the vertices.

V

valueOf(String) - Static method in enum com.Grapher.Analysis.Analyser.DifferenceAlg

Returns the enum constant of this type with the specified name.

values() - Static method in enum com.Grapher.Analysis.Analyser.DifferenceAlg

Returns an array containing the constants of this enum type, in the order they are declared.

W

weight() - Method in class com.Grapher.CustomGraph.CustomEdge

Give Edge weight.

writeCSV(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Convertors.Convertor

Represent Graph as a CSV string.

writeDOT(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Convertors.Convertor

Represent Graph as a DOT string.

writeGraph6(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Convertors.Convertor

Represent Graph as a Graph6 string.

writeGraphML(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Convertors.Convertor

Represent Graph as a GramphML string.

writeJSON(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Convertors.Convertor

Represent Graph as a JSON string.

writeMatrix(Graph<CustomVertex, CustomEdge>) - Method in class com.Grapher.Convertors.Convertor

Represent Graph as a matrix string.

_

_algorithm - Variable in class com.Grapher.Apps.Params

_attributes - Variable in class com.Grapher.CustomGraph.CustomEdge

_attributes - Variable in class com.Grapher.CustomGraph.CustomVertex

_attributesReg - Static variable in class com.Grapher.CustomGraph.CustomEdge

_attributesReg - Static variable in class com.Grapher.CustomGraph.CustomVertex

_build - Static variable in class com.Grapher.Utils.Info

_builder - Static variable in class com.Grapher.Utils.Info

_connectivity - Variable in class com.Grapher.Analysis.Algorithms.ConnectivityAlgorithm

_edgeNames - Static variable in class com.Grapher.CustomGraph.CustomEdge

_edgeWeights - Static variable in class com.Grapher.CustomGraph.CustomEdge

_gid - Static variable in class com.Grapher.CustomGraph.CustomEdge

_gid - Static variable in class com.Grapher.CustomGraph.CustomVertex

_graph - Variable in class com.Grapher.Analysis.Analyser

_help - Static variable in class com.Grapher.Apps.CLI

_id - Variable in class com.Grapher.CustomGraph.CustomEdge

_id - Variable in class com.Grapher.CustomGraph.CustomVertex

_infile - Variable in class com.Grapher.Apps.Params

_initialised - Static variable in class com.Grapher.Utils.Init

_name - Static variable in class com.Grapher.Utils.Info

_noedge - Variable in class com.Grapher.Apps.Params

_novertex - Variable in class com.Grapher.Apps.Params

_outfile - Variable in class com.Grapher.Apps.Params

_params - Variable in class com.Grapher.Analysis.Analyser

_params - Variable in class com.Grapher.Convertors.Convertor

_quiet - Variable in class com.Grapher.Apps.Params

_script - Variable in class com.Grapher.Apps.Params

_show - Variable in class com.Grapher.Apps.Params

_version - Static variable in class com.Grapher.Utils.Info

_vertexNames - Static variable in class com.Grapher.CustomGraph.CustomVertex

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